Science

The science behind the Seattle Flu Study.

Code

The Seattle Flu Study is entirely open source! Our source code repositories are under the Seattle Flu Study organization on GitHub. A few repos of interest:

  • ID3C — Data logistics including our database schema, ETL pipelines, CLI tools, and web API.
  • Assembly — Our influenza genome assembly pipeline.
  • Augur build — Our Nextstrain-based influenza phylogenetics analysis
  • Website — This website.

Datasets

To come.

Who to contact with questions

Curious about the study? We’d love to hear from you! Send an email to hello@seattleflu.org.

How to request more data

Want to dig deeper? Send us an email to hello@seattleflu.org describing the data you’re interested in and your analysis plans.

Publications

To come.