The science behind the Seattle Flu Study.


The Seattle Flu Study is entirely open source! Our source code repositories are under the Seattle Flu Study organization on GitHub. A few repos of interest:

  • ID3C — Data logistics including our database schema, ETL pipelines, CLI tools, and web API.
  • Assembly — Our influenza genome assembly pipeline.
  • Augur build — Our Nextstrain-based influenza phylogenetics analysis
  • Website — This website.


To come.

Who to contact with questions

Curious about the study? We’d love to hear from you! Send an email to

How to request more data

Want to dig deeper? Send us an email to describing the data you’re interested in and your analysis plans.


To come.